The E-Cell System version 3¶
Documentation¶
Models¶
Model | Reference | Download |
---|---|---|
Mitochondrion | A general computational model of mitochondrial metabolism in a whole organelle scale. Yugi and Tomita, 2004 | E-Cell3 model |
Kyoto Model (cardiac myocyte) | Simulation of ATP metabolism in cardiac excitation-contraction coupling. Matsuoka et. al., 2004 Role of individual ionic current systems in the SA node hypothesized by a model study. Sarai et. al., 2003 Role of individual ionic current systems in ventricular cells hypothesized by a model study. Matsuoka et. al., 2003 |
E-Cell3 model |
Goldbeter1995 (Drosophila circadian rhythm) | A model for circadian oscillations in the Drosophila period protein (PER). Goldbeter, 1995 | E-Cell3 model SBML |
Tyson1999 (circadian rhythm) | A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM. Tyson, et.al., 1999 | E-Cell3 model SBML |
Scheper1999 (molecular circadian clocks) | A model of molecular circadian clocks: multiple mechanisms for phase shifting and a requirement for strong nonlinear interactions. Scheper, et. al., 1999 | E-Cell3 model SBML |
Leloup1999 (Drosophila circadian oscillations) | Chaos and birhythmicity in a model for circadian oscillations of the PER and TIM proteins in drosophila. Leloup and Goldbeter, 1999 | E-Cell3 model |
Petri2001 (molecular feedback loop of D.melanogaster clock genes) | Phase response curves of a molecular model oscillator: implications for mutual coupling of paired oscillators. Petri and Stengl, 2001 | E-Cell3 model SBML |
Ueda2001 (Drosohila circadian rhythm) | Robust oscillations whithin the interlocked feedback model of Drosophila circadian rhythm. Ueda, et. al., 2001 | E-Cell3 model |
Smolen2002 (Drosophila circadian oscillator) | A reduced model clarifies the role of feedback loops and time delays in the Drosophila circadian oscillator. Smolen, el. al., 2002 | E-Cell3 model SBML |
Smolen2004 (Drosophila circadian rhythm generation) | Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK. Smolen, et. al., 2004 | E-Cell3 model SBML |