Personal tools
You are here: Home → Software → Releases → E-Cell 3.1.104rc1 → Changelog
 

Changelog

Changelog

Changes for E-Cell System version 3.1.105 from version 3.1.103

libecs/emc:

  • update currenttime in interrupt(), because this procedure is effectively a stepping (shafi)
  • new design for FluxProcess. this class of Processes no longer change Variable values, but simply uses Activity property to let Steppers know derivative values. Process::TotalVelocity was removed. (kaizu/shafi)
  • Logger bug 1287630 (gabor)
  • Scheduling mechanism refactoring and performance tuning (shafi)

DM:

  • Step size selection bugfix in ODE Steppers (kaizu)
  • Updates on FluxDistribution Steppers/Processes (tomo)
  • Deprecated NRStepper, use DiscreteEventStepper instead (shafi)
  • Deprecated Process classes: - RapidEquilibrium, - CatalyzedMassActionFlux - IsoUniUniFlux - OrderedFlux - RandomFlux. Use ExpressionFluxProcess or PythonFluxProcess instead. (shafi)
  • Deprecated CompartmentSystem, use System instead. (shafi)

pyecs/pyecell:

  • Bug #1235119, No error message when system structure is broken (shafi)
  • Improvements in session-manager (sugi)
  • SBML bug fixes, use of annotation tags (kaizu)
  • Upgraded em.py to version 3.3 (addy)

GUI:

  • Massive updates in the model editor (gabor et. al)
  • Support for pygtk-2.6 (satya)

Build mechanism / overall coding issues:

  • Support for freebsd (libdl detection, VVector.h etc.) (Hisham Zarka)
  • Boost-related things is now treated as regular stuff. (shafi)
  • Support for Linux/x86-64 (shafi)
  • Support for gcc4.x (shafi)
  • Switch from python-numeric to numpy (shafi)
  • Changes in installation paths (PREFIX/lib/ecell-3.1 etc) (shafi)

Sample models:

  • ODEStepper is now the default in all ODE models. (kaizu)

Miscellaneous:

  • Program name changes: - toollauncher -> ecell3-toollauncher, - gecell -> ecell3-session-monitor, - gecell3-session -> ecell3-session-gui (shafi)
  • Many other cleanups, small fixes.
Document Actions