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E-Cell 3 Downloads

Download and installation instruction of E-Cell System Version 3.

E-Cell Simulation Environment version 3.1.106 can be downloaded from here in E-Cell sourceforge.net project page.

Windows version (3.1.105) is also available. --> download Windows version

Pre-built Packages

Pre-built (binary) packages are available for the following distributions:

  • Debian (Etch)
  • Ubuntu (Feisty Fawn / Gutsy Gibbon / Hardy Heron)
  • Fedora Core (7, 8)
  • CentOS and Red Hat Enterprise Linux (4, 5)

The build is divided into 5 packages:

  • ecell3 (CLI tools and utilities)
  • ecell3-dev / ecell3-devel (necessary for DM developing)
  • ecell3-session-monitor (GUI session monitor)
  • ecell3-model-editor (GUI model editor)
  • ecell3-tool-launcher (GUI compiler launcher)

Packages for these distributions are placed at downloads.e-cell.org.

Note that the repositories contain several packages of other projects (e.g. libSBML) for convenience. See "Notes for third-party package distribution" for detail

You can browse the available packages through the very simple indexer from http://downloads.e-cell.org/ .

Instruction

Debian / Ubuntu (apt and dpkg based)

Append any one of the following lines to /etc/apt/sources.list.

  • Debian: Etch

    deb http://downloads.e-cell.org/apt/etch/ etch contrib

  • Ubuntu: Feisty Fawn

    deb http://downloads.e-cell.org/apt/feisty/ feisty contrib

  • Ubuntu: Gutsy Gibbon

    deb http://downloads.e-cell.org/apt/gutsy/ gutsy contrib

  • Ubuntu: Hardy Heron

    deb http://downloads.e-cell.org/apt/hardy/ hardy contrib

Next, run apt-get update to update the local copies of package databases.

Finally, just type apt-get install ecell3 to see everything gets installed without difficulties anymore :)

Fedora Core / Cent OS (yum and rpm based)

Save any one of the following content to /etc/yum.repos.d/ecell.repo .

  • CentOS: Version 4, 5

    # Name: E-Cell RPM Repository for Red Hat Enterprise 4, 5
# URL: http://downloads.e-cell.org/
[ecell]
name = Red Hat Enterprise $releasever - E-Cell
baseurl = http://downloads.e-cell.org/yum/el$releasever/$basearch
enabled = 1
protect = 0
gpgcheck = 0

  • Fedora Core: Version 7, 8

    # Name: E-Cell RPM Repository for Fedora Core
# URL: http://downloads.e-cell.org/
[ecell]
name = Fedora Core $releasever - E-Cell
baseurl = http://downloads.e-cell.org/yum/fc$releasever/$basearch
enabled = 1
protect = 0
gpgcheck = 0

And then type yum install ecell3 to get your E-Cell installation from the repository.

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