FAQ

Frequently asked question about E-Cell.

E-Cell directory I get from SVN has no configure file.

When you build from SVN you have to run autogen.sh shell script to generate configure etc and get the source tree ready to make.

E-Cell fails to load the model that includes any Process I wrote myself, e.g. dumping:

RuntimeError: Failed to create Entity [Process:/CELL/CYTOPLASM:B1]: Failed to find or load a DM [EnzymeReactionFluxProcess]: EnzymeReactionFluxProcess.so: cannot open shared object file: No such file or directory

Set an environmental variable ECELL3_DM_PATH the directory your own DMs are in. for example:

%ECELL3_DM_PATH=. ecell3-session -f [modelfile].eml

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