An Accelerated Biochemical Brownian Dynamics Code Released
Models
You can download models that works on E-Cell3. Please contact the webmaster from 'contact' link (top right of this page) to make your model listed here.
| Model | Reference | Download |
| Mitochondrion [description] |
A general computational model of mitochondrial metabolism
in a whole organelle scale. Yugi and Tomita, 2004 |
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| Luo-Rudy Model [description] (cardiac myocyte) |
Action potential and contractility changes in [Na(+)](i) overloaded cardiac myocytes: a simulation study.
Faber and Rudy, 2000 |
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| Kyoto Model
[description] (cardiac myocyte) |
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| Goldbeter1995 [description] (Drosophila circadian rhythm) |
A model for circadian oscillations in the Drosophila period protein (PER). Goldbeter, 1995 |
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Tyson1999 (circadian rhythm) |
A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM. Tyson, et. al., 1999 |
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| Scheper1999 [description] (molecular circadian clocks) |
A model of molecular circadian clocks: multiple mechanisms for phase shifting and a requirement for strong nonlinear interactions. Scheper, et. al., 1999 |
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Leloup1999 (Drosophila circadian oscillations) |
Chaos and birhythmicity in a model for circadian oscillations of the PER and TIM proteins in drosophila. Leloup and Goldbeter, 1999 |
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Petri2001 (molecular feedback loop of D. melanogaster clock genes) |
Phase response curves of a molecular model oscillator: implications for mutual coupling of paired oscillators. Petri and Stengl, 2001 |
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Ueda2001 (Drosophila circadian rhythm) |
Robust oscillations within the interlocked feedback model of Drosophila circadian rhythm. Ueda, et. al., 2001 |
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Smolen2002 (Drosophila circadian oscillator) |
A reduced model clarifies the role of feedback loops and time delays in the Drosophila circadian oscillator. Smolen, et. al., 2002 |
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Smolen2004 (Drosophila circadian rhythm generation) |
Simulation of Drosophila circadian oscillations, mutations, and light responses by a model with VRI, PDP-1, and CLK. Smolen, et. al., 2004 |
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